navis.MeshNeuron.skeletonize

MeshNeuron.skeletonize(method='wavefront', heal=True, inv_dist=None, **kwargs)

Skeletonize mesh.

See navis.conversion.mesh2skeleton() for details.

Parameters:

• method ("wavefront" | "teasar") – Method to use for skeletonization.

• heal (bool) – Whether to heal a fragmented skeleton after skeletonization.

• inv_dist (int | float) – Only required for method “teasar”: invalidation distance for the traversal. Smaller inv_dist captures smaller features but is slower and vice versa. A good starting value is around 2-5 microns.

• **kwargs – Additional keyword are passed through to navis.conversion.mesh2skeleton().

Returns:

skeleton

Return type:

navis.TreeNeuron