navis.health_check¶

navis.health_check(x, verbose=True)[source]¶

Run a health check on TreeNeurons and flag potential issues.

Parameters:

x (TreeNeuron | NeuronList) – Neuron(s) whose nodes to classify nodes.
verbose (bool) – If True, will print errors in addition to returning them.

Return type:

list of issues or None

Examples

>>> import navis
>>> n = navis.example_neurons(1)
>>> navis.health_check(n)
Neuron 1734350788 seems perfectly fine.