navis.interfaces.cytoscape.generate_network¶

navis.interfaces.cytoscape.generate_network(x, layout='fruchterman-rheingold', apply_style=True, clear_session=True)[source]¶

Load network into Cytoscape.

Parameters:

x (networkX Graph | pandas.DataFrame) –
Network to export to Cytoscape. Can be:
1. NetworkX Graph e.g. from navis.networkx (preferred!)
2. Pandas DataFrame. Mandatory columns: ‘source’,’target’,’interaction’
layout (str | None, optional) – Layout to apply. Set to None to not apply any.
apply_style (bool, optional) – If True will apply a “navis” style to the network.
clear_session (bool, optional) – If True, will clear session before adding network.

Return type:

cytoscape Network