navis.interfaces.r.NBLASTresults¶

class navis.interfaces.r.NBLASTresults(results, sc, scr, query, target, nblast_param)[source]¶

Class holding NBLAST results and wrappers that allow easy plotting.

results¶

Contains top N results.

Type:: pandas.Dataframe

sc¶

Contains original RNblast forward scores.

Type:: Robject

scr¶

Original R Nblast reverse scores (Top N only).

Type:: Robject

query¶

The original query neurons.

Type:: R object

param¶

Contains parameters used for nblasting.

Type:: dict

target¶

The original target neurons.

Type:: R robject

date¶

Time of nblasting.

Type:: datetime object

Examples

>>> import navis
>>> # Blast neuron by skeleton ID
>>> nbl = navis.nblast( skid, remote_instance = rm )
>>> # Sort results by mu_score
>>> nbl.sort( 'mu_score' )
>>> # Show table
>>> nbl.results
>>> # 3D plot top 5 hits using vispy
>>> canvas, view = nbl.plot(hits=5)
>>> # Show distribution of results
>>> import matplotlib.pyplot as plt
>>> nbl.results.hist( layout=(3,1), sharex=True)
>>> plt.show()

Init function.

__init__(results, sc, scr, query, target, nblast_param)[source]¶: Init function.

Methods

`__init__`(results, sc, scr, query, target, ...)	Init function.
`get_dps`(entries)	Retrieve dotproducts from DPS database (neuronlistfh) as neuronslist.
`plot3d`([hits, plot_neuron, plot_brain])	Plot nblast hits using `navis.plot3d()`.
`sort`(columns)	Sort results by given column(s).